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# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 COG0113 284-318 -6.990 14  [S] COG2991 Uncharacterized protein conserved in bacteria
PDB0113 1-338 -136.000 65  1s7q_A mol:protein length:348 H-2 class I histocompatibility antigen, K-B a
PfamA26U 1-179 -97.800 79  PF00129.13; 1A01_SAGOE/25-203; Class I Histocompatibility antigen, domains alpha 1 and 2
43-311 -15.100 13  PF02124.10; Q8JMQ7_9ALPH/202-414; Marek`s disease glycoprotein A
190-271 -32.000 25  PF07654.10; IGHG3_MOUSE/234-320; Immunoglobulin C1-set domain
SCOP175 1-181 -95.100 88  d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-B27 [TaxId: 9606]}
182-276 -57.500 100  d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 COG0113 2-421 -103.000 33  [R] KOG3656 FOG: 7 transmembrane receptor
PDB0113 6-422 -110.000 24  4eiy_A mol:protein length:447 Adenosine receptor A2a/Soluble cytochrome b56
PfamA26U 38-418 -31.300 11  PF10321.4; Q9N526_CAEEL/3-311; Serpentine type 7TM GPCR chemoreceptor Srt
53-400 -94.900 36  PF00001.16; HRH2_CANFA/35-288; 7 transmembrane receptor (rhodopsin family)
SCOP175 1-417 -66.500 18  d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 COG0113 46-512 -90.800 28  [C] COG1301 Na+/H+-dicarboxylate symporters
PDB0113 44-493 -90.700 29  3kbc_A mol:protein length:425 425aa long hypothetical proton glutamate symp
PfamA26U 54-485 -68.900 17  PF00375.13; A4CFF6_9GAMM/3-377; Sodium:dicarboxylate symporter family
SCOP175 54-486 -88.200 30  d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 COG0113 1-599 -124.000 69  [A] KOG0063 RNAse L inhibitor, ABC superfamily
PDB0113 1-599 -123.000 68  3j16_B mol:protein length:608 Rli1p
PfamA26U 7-37 -9.720 77  PF04068.10; A3FQC8_CRYPV/19-50; Possible Fer4-like domain in RNase L inhibitor, RLI
70-525 -14.500 9  PF13175.1; A9A6W0_METM6/4-391; AAA ATPase domain
94-597 -14.200 9  PF07088.6; GVPD1_HALSA/23-536; GvpD gas vesicle protein
117-245 -24.700 15  PF00005.22; YTFR_ECOLI/49-174; ABC transporter
117-542 -23.000 10  PF09818.4; Q2C6W1_9GAMM/1-438; Predicted ATPase of the ABC class
SCOP175 69-304 -45.100 16  d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
104-533 -11.700 13  d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
346-540 -41.400 16  d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
361-588 -28.800 22  d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 COG0113 1-86 -59.400 48  [I] COG4281 Acyl-CoA-binding protein
PDB0113 1-87 -61.500 100  2cb8_A mol:protein length:87 ACYL-COA-BINDING PROTEIN
PfamA26U 3-86 -58.100 46  PF00887.14; ACBP6_ARATH/3-87; Acyl CoA binding protein
SCOP175 2-87 -60.000 93  d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range:1-300) 300 COG0113 18-300 -91.600 29  [I] KOG0136 Acyl-CoA oxidase
PDB0113 18-300 -92.500 29  1is2_A mol:protein length:661 acyl-CoA oxidase
PfamA26U 33-274 -20.400 9  PF11794.3; A3K7D3_9RHOB/13-275; 4-hydroxyphenylacetate 3-hydroxylase N terminal
SCOP175 16-290 -103.000 34  d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range:151-450) 300 COG0113 1-300 -110.000 39  [I] KOG0136 Acyl-CoA oxidase
PDB0113 1-300 -111.000 39  1is2_A mol:protein length:661 acyl-CoA oxidase
PfamA26U 1-124 -16.100 12  PF11794.3; A3K7D3_9RHOB/13-275; 4-hydroxyphenylacetate 3-hydroxylase N terminal
144-300 -29.300 17  PF00441.19; O33331_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
SCOP175 1-140 -74.800 50  d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
148-300 -66.300 38  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range:301-600) 300 COG0113 1-300 -78.300 27  [I] KOG0136 Acyl-CoA oxidase
PDB0113 1-300 -79.000 30  1w07_A mol:protein length:659 ACYL-COA OXIDASE
PfamA26U 1-166 -34.200 19  PF00441.19; O33331_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
210-300 -21.900 15  PF01756.14; O62140_CAEEL/484-669; Acyl-CoA oxidase
SCOP175 1-192 -87.600 36  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
193-300 -22.600 20  d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range:451-700) 250 COG0113 1-245 -59.100 23  [I] KOG0136 Acyl-CoA oxidase
PDB0113 1-250 -60.700 22  1w07_A mol:protein length:659 ACYL-COA OXIDASE
PfamA26U 60-246 -69.400 18  PF01756.14; O62140_CAEEL/484-669; Acyl-CoA oxidase
SCOP175 1-38 -13.900 21  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
43-250 -68.900 23  d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range:1-300) 300 COG0113 7-300 -74.500 24  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
PDB0113 17-300 -29.700 9  3p24_A mol:protein length:397 BFT-3
179-300 -60.400 49  1r54_A mol:protein length:214 ADAM 33
PfamA26U 2-137 -51.700 23  PF01562.14; ATS3_HUMAN/42-201; Reprolysin family propeptide
185-300 -55.800 24  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
SCOP175 183-300 -59.700 50  d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range:151-450) 300 COG0113 3-300 -75.700 30  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
PDB0113 20-300 -101.000 39  2ero_A mol:protein length:427 vascular apoptosis-inducing protein 1
PfamA26U 35-233 -78.900 24  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
250-300 -23.000 45  PF00200.18; ADA32_HUMAN/400-477; Disintegrin
SCOP175 33-234 -84.900 54  d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
252-300 -21.500 60  d1j2la_ g.20.1.1 (A:) Flavoridin (triflavin) {Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]}
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range:301-600) 300 COG0113 2-299 -70.100 34  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
PDB0113 1-299 -85.400 35  3dsl_A mol:protein length:419 Zinc metalloproteinase-disintegrin bothropasi
PfamA26U 1-83 -29.600 22  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
100-175 -30.300 42  PF00200.18; ADA32_HUMAN/400-477; Disintegrin
177-294 -37.300 25  PF08516.7; ADAM2_MACFA/473-589; ADAM cysteine-rich
SCOP175 1-84 -34.200 60  d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
102-172 -25.900 50  d1j2la_ g.20.1.1 (A:) Flavoridin (triflavin) {Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]}
213-265 -10.100 13  d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]}
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range:451-750) 300 COG0113 1-269 -50.100 28  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
143-300 -10.500 13  [R] KOG1312 DHHC-type Zn-finger proteins
PDB0113 1-227 -53.400 32  3g5c_A mol:protein length:510 ADAM 22
97-300 -12.700 6  3i08_A mol:protein length:220 Neurogenic locus notch homolog protein 1
PfamA26U 1-254 -11.600 15  PF07243.6; GP_PTPV/282-808; Phlebovirus glycoprotein G1
27-142 -26.400 25  PF08516.7; ADAM2_MACFA/473-589; ADAM cysteine-rich
38-241 -13.200 12  PF06247.6; Q968Z9_9APIC/23-221; Plasmodium ookinete surface protein Pvs28
137-300 -11.600 16  PF13908.1; Q6DC69_DANRE/23-231; Wnt and FGF inhibitory regulator
152-206 -13.900 21  PF01414.14; JAG2_RAT/132-194; Delta serrate ligand
SCOP175 177-209 -9.280 27  d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range:601-900) 300 COG0113 1-119 -28.400 19  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
1-300 -21.200 8  [W] KOG3545 Olfactomedin and related extracellular matrix glycoproteins
PDB0113 1-75 -31.600 29  3g5c_A mol:protein length:510 ADAM 22
1-287 -10.100 8  1eys_C mol:protein length:382 PHOTOSYNTHETIC REACTION CENTER
123-300 -14.800 7  3gdb_A mol:protein length:937 Putative uncharacterized protein spr0440
PfamA26U 4-48 -11.600 20  PF04885.8; Q40579_TOBAC/7-146; Stigma-specific protein, Stig1
31-299 -11.000 10  PF00513.13; VL2_HPV56/5-455; Late Protein L2
82-300 -14.100 8  PF05934.6; CLCC1_HUMAN/3-551; Mid-1-related chloride channel (MCLC)
SCOP175 1-67 -8.070 19  d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis mellifera) [TaxId: 7460]}
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range:751-930) 180 COG0113 1-136 -17.300 11  [TV] KOG3966 p53-mediated apoptosis protein EI24/PIG8
3-180 -16.500 8  [A] KOG2245 Poly(A) polymerase and related nucleotidyltransferases
PDB0113 1-180 -20.900 8  3gdb_A mol:protein length:937 Putative uncharacterized protein spr0440
PfamA26U 1-180 -18.200 8  PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor
SCOP175 1-90 -4.540 0  d1gw5a_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 COG0113 6-374 -115.000 62  [C] COG1062 Zn-dependent alcohol dehydrogenases, class III
PDB0113 1-374 -117.000 100  1mc5_A mol:protein length:374 Alcohol dehydrogenase class III chi chain
PfamA26U 32-160 -35.300 23  PF08240.7; Q92UI4_RHIME/24-130; Alcohol dehydrogenase GroES-like domain
202-333 -27.400 21  PF00107.21; ADH_SULSO/182-311; Zinc-binding dehydrogenase
SCOP175 2-200 -83.000 52  d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
164-339 -62.200 65  d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range:1-300) 300 COG0113 2-300 -15.100 9  [R] KOG4433 Tweety transmembrane/cell surface protein
PDB0113 1-300 -13.700 13  3J1N Entity 1(prereleased)
PfamA26U 1-207 -13.600 11  PF05782.6; ECM1_HUMAN/1-540; Extracellular matrix protein 1 (ECM1)
2-300 -13.300 9  PF03344.10; A7KII2_SALSA/6-727; Daxx Family
SCOP175 1-89 -5.110 0  d1gw5a_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range:151-450) 300 COG0113 20-300 -15.100 10  [K] KOG0323 TFIIF-interacting CTD phosphatases, including NLI-interacting factor
PDB0113 54-300 -11.300 7  3gdb_A mol:protein length:937 Putative uncharacterized protein spr0440
244-300 -18.600 45  3ihw_A mol:protein length:184 CENTG3
PfamA26U 5-295 -11.400 12  PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor
9-213 -11.800 9  PF05782.6; ECM1_HUMAN/1-540; Extracellular matrix protein 1 (ECM1)
SCOP175 252-300 -18.100 100  d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range:301-600) 300 COG0113 54-257 -10.600 13  [J] KOG0458 Elongation factor 1 alpha
90-300 -62.400 22  [R] KOG0395 Ras-related GTPase
PDB0113 88-300 -58.400 18  3cph_A mol:protein length:213 Ras-related protein SEC4
100-277 -69.200 98  2bmj_A mol:protein length:178 CENTAURIN GAMMA 1
PfamA26U 62-274 -16.100 10  PF05783.6; Q561T1_DANRE/5-493; Dynein light intermediate chain (DLIC)
108-268 -54.400 28  PF00071.17; RAB9A_CANFA/9-174; Ras family
SCOP175 89-295 -11.600 8  d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}
102-275 -68.600 100  d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range:451-750) 300 COG0113 1-155 -44.500 18  [U] KOG0081 GTPase Rab27, small G protein superfamily
1-188 -40.000 17  [R] KOG0395 Ras-related GTPase
1-285 -30.400 11  [S] KOG4273 Uncharacterized conserved protein
PDB0113 1-127 -60.500 100  2bmj_A mol:protein length:178 CENTAURIN GAMMA 1
PfamA26U 1-118 -44.600 25  PF00071.17; RAB9A_CANFA/9-174; Ras family
183-284 -9.890 10  PF00373.13; Q4T8R8_TETNG/88-414; FERM central domain
SCOP175 1-125 -60.000 100  d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}
104-284 -10.400 17  d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}
228-284 -12.600 23  d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Doukhanina EV, Chen S, van der Zalm E, Godzik A, Reed J, Dickman MB. Identification and functional characterization of the BAG protein family inArabidopsis thaliana. Biol Chem. 2006 Jul 7;281(27):18793-801. Epub 2006 Apr 24.