| Psi-Blast: | psi-nr85 ncbi | FFAS03 vs. | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron |
FFAS03 scores below -9.5 usually mean significant similarity (less than 3% of false positives)
This master-slave alignment does not show gaps in the query sequence.
Please, use ali links, to see full alignments between query and template sequences.
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 | ||||||||
| # | Score | Template | More... | Result vs. | %id | First | MLLRFRVLPLVFVISLLSGCGLASKAFYSAGDKLFQPGDDAVASMQTYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQDSTIPTLQNPKVVK | Last |
| 1 | -118.000 | 3f1z_A mol:protein length:133 putative nucleic acid-binding lipoprotein | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 100 | 2 | ......................ASKAFYSAGDKLFQPGDDAVASMQTYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQDSTIPTLQNPKVVK | 133 |
| 2 | -7.380 | 1x53_A mol:protein length:145 Activator of 90 kDa heat shock protein ATPase | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 12 | 16 | .......................KETFLTSPEELYR------VFTTQELVQAFTHAPATLEADRGGKFHMVDGNVSGEFTDLVPEKHIVMKWRFTITLTFIDKNGETELCMEGRGIPAPEEERTRQGWQRYYFEGIKQTFGY............ | 137 |
| 3 | -6.990 | 3ecf_A mol:protein length:130 NTF2-like Protein | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 20 | 1 | ....................GMATEKYHEILKKYFLSFETGDFSQVQFSCLEFLSPISGNTLKGTEEVIP--VNIMSTTVEYPRASGV-------------QMRTTKGTLYTLHNFFRLDEEGIV............................. | 103 |
| 4 | -6.910 | 2k4v_A mol:protein length:125 uncharacterized protein PA1076 | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 15 | 4 | .................................MFEPGHLHLVSLPGLDQQDI---------NIHIRYEVRQNAESGAYVHFDMDGEIDGKPF------SDSFELPRDTAFNFASDATRVAQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAH | 109 |
| 5 | -6.730 | 2gs3_A mol:protein length:185 Phospholipid hydroperoxide glutathione peroxi | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 13 | 45 | .........VCIVTNVASQGGKTEVN-YTQLVDLHARYAECGLRILAFPCNQF------KQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDWKWMKIQPKGKGILGNAIKWNF......................................... | 147 |
| 6 | -6.650 | 2f6i_A mol:protein length:215 ATP-dependent CLP protease, putative | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 16 | 30 | .FFKKRIIYLTDEINKKTADELISQLLYLDNININSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIENALEAKQYGIIDEVIETKLPHPYFNKVEK | 209 |
| 7 | -6.640 | 2obi_A mol:protein length:183 Phospholipid hydroperoxide glutathione peroxi | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 14 | 43 | .........VCIVTNVASQCGKTEVN-YTQLVDLHARYAECGLRILAFPCNQF------KQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDWKWMKIQPKGKGILGNAIKWNF......................................... | 145 |
| 8 | -6.640 | 2pi2_A mol:protein length:270 Replication protein A 32 kDa subunit | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 11 | 8 | ....................SYGSSSYGGAGGYTQSPGGFGSPAKKSRARAQHIVPCTISQLLSATLVDEVFVTIVGIIRHAEKAPT-----NIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLE | 150 |
| 9 | -6.640 | 3fyf_A mol:protein length:176 PROTEIN BVU-3222 | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 11 | 52 | ......................ADNVVFRNGIMRFVSSNTNYVEVNDGQGIIQTAFTNFVYNWSPNGLGG--VTVQGNVNGISMRQDKDGNVYYNYGINGIAVSATVSIVTGGTNQASVTINPNFSGNTLTMNGYLVPYNEG............ | 170 |
| 10 | -6.550 | 2c8t_A mol:protein length:206 ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNI | psi-nr85 ncbi ali model | COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron | 17 | 25 | .LLSERIIFLGSEVNDEIANRLCAQILLLAAEDINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS.......................... | 170 |
| Hot Paper and Paper of the Day: | ||
| Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. | |
| Alonso A, Rahmouni S, Williams S, van Stipdonk M, Jaroszewski L, Godzik A, Abraham RT, Schoenberger SP, Mustelin T. Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nat Immunol. 2003 Jan;4(1):44-8. Epub 2002 Nov 25. | |
FFAS is supported by the NIH grant R01-GM087218-01
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