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Query: d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}, from SCOP175

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSSGSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGSGPSSGLast
1 -54.500d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors  100  1GSSGSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGSGPSSG 92
2 -34.100d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  21  28.YRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG---KNVALNVQEV.......... 105
3 -10.300d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  6....................................IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLA......... 52
4 -10.300d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  10....................................EEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS.................. 47
5 -10.300d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  23  10....................................QEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG.................. 47
6 -10.100d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  5....................................VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKG.................. 42
7 -10.100d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  6....................................TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE.................... 41
8 -9.930d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  11..............................ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES.................. 54
9 -9.770d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1..................................QEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP.................. 40
10 -9.720d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  5....................................IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD.................. 42
11 -9.520d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  6..............................ALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAIT......... 58
12 -9.360d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  3...........................VARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKIT......... 58
13 -9.120d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  12....................................LSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKD.................. 49

FFAS is supported by the NIH grant R01-GM087218-01
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Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.